PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00087578001
Common NameGSBRNA2T00087578001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 345aa    MW: 38249.9 Da    PI: 7.2892
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00087578001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702224.32.4e-691152803154
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.........ksk 81 
                           g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s+  ++a++kr re          +s 
  GSBRNA2T00087578001 115 GGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSATSRetQNAKAKRLREAnggdnddkdRSG 204
                          5789******************************************************99999884433334444444777777766666 PP

               DUF702  82 kqsalsstklssaeskkelet.sslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                           + ++ +t+l++a+s++ le+ ++lP+evss+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG+++
  GSBRNA2T00087578001 205 GSGSALATRLVNANSNSGLEAiQKLPPEVSSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 280
                          777888899999999988875166*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.7E-64117279IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.7E-27119161IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.8E-26229278IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNSKQDHH QVDKDHHHHQ DKSNYLYLYK DEIYNTNKGF EIWPPQYFQQ  60
QQEQQQHHVT ASTNLYSFGM VPSSSNNNNN NRSRSLYFNV VSDHEPGGFS VTRQGGGMNC  120
QDCGNQAKKD CPHLRCRTCC KSRGFHCQTH VKSTWVPAAK RRERLAQLAS LQHHSATSRE  180
TQNAKAKRLR EANGGDNDDK DRSGGSGSAL ATRLVNANSN SGLEAIQKLP PEVSSPAVFR  240
CVRVSSIEED EDDQEYAYQT AVNIGGHVFK GILYDQGPDQ DHHHQLNLLA STATTTNAEE  300
IAAKTAVTIA GNNNSGLILD PSSLYPTQLN SFIAGTPFFT PPRD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.292010.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013652439.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A078IBM80.0A0A078IBM8_BRANA; BnaAnng09150D protein
STRINGBra015837.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-165SHI-related sequence 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]